- Stepper
Stepper
trials_per_update()
trials_per_write()
output_file()
output_file()
output_file_append_phase()
empty_output_file()
append()
rewrite_header()
stop_after_phase()
start_after_phase()
stop_after_iteration()
start_after_iteration()
configuration_index()
configuration()
set_state()
is_multistate()
state()
accumulator()
get_accumulator()
trials_since_update()
trials_since_write()
is_multistate_aggregate()
header()
printer()
Stepper()
- TrialCompute
- TrialComputeAdd
- TrialComputeMove
- TrialComputeRemove
- TrialComputeTranslate
- TrialComputeVolume
- TrialSelect
TrialSelect
group_index()
particle_type()
configuration_index()
configuration()
get_configuration()
set_configuration_index()
before_select()
select()
sel()
precompute()
mobile()
set_mobile()
mobile_original()
set_mobile_original()
anchor()
anchor_position()
set_trial_state()
reset_mobile()
probability()
mid_stage()
set_ghost()
is_ghost()
printable()
are_constraints_satisfied()
is_particle_type_set()
remove_unphysical_sites()
replace_mobile()
property()
has_property()
add_or_set_property()
is_isotropic()
- TrialSelectAll
- TrialSelectBond
- TrialSelectAngle
- TrialSelectDihedral
- TrialSelectParticle
- Acceptance
Acceptance
ln_metropolis_prob()
set_ln_metropolis_prob()
add_to_ln_metropolis_prob()
reject()
set_reject()
endpoint()
set_endpoint()
reset()
updated()
energy_new()
set_energy_new()
add_to_energy_new()
num_configurations()
energy_profile_new()
set_energy_profile_new()
add_to_energy_profile_new()
subtract_from_energy_profile_new()
energy_old()
set_energy_old()
add_to_energy_old()
energy_profile_old()
set_energy_profile_old()
add_to_energy_profile_old()
energy_ref()
set_energy_ref()
macrostate_shift()
add_to_macrostate_shift()
add_to_perturbed()
set_perturbed_state()
perturbed()
- Action
- Run
- RemoveTrial
- RemoveModify
- RemoveAnalyze
- RefPotential
- Analyze
- AnalyzeFactory
- Constraint
- TrialStage
- Tunable
- WriteModelParams
- ConstrainNumParticles
- Modify
- ModifyFactory
- MonteCarlo
MonteCarlo
MonteCarlo()
MonteCarlo()
begin()
parse_args()
resume()
set()
random()
seed_random()
add()
configuration()
add()
add()
set()
add_to_optimized()
add_to_reference()
add()
set()
thermo_params()
set()
system()
initialize_system()
set()
criteria()
initialize_criteria()
add()
add()
remove_trial()
trials()
trial()
initialize_trials()
add()
remove_analyze()
analyzers()
analyze()
num_analyzers()
initialize_analyzers()
add()
remove_modify()
modify()
num_modifiers()
set()
write_checkpoint()
run()
attempt()
reset_trial_stats()
run_num_trials()
run_until_num_particles()
run_for_hours()
run_until_complete()
run_until_file_exists()
attempt_trial()
write_to_file()
- Perturb
- PerturbRemove
- PerturbVolume
- PerturbMove
- WriteCheckpoint
- Rosenbluth
- PerturbTranslate
- PerturbRotate
- PerturbAnywhere
- PerturbAdd
- PerturbDistance
- PerturbDistanceAngle
- PerturbDihedral
- Trial
Trial
weight()
weight_per_number_fraction()
number_fraction_exclude_type()
add_stage()
add_stage()
add_stage()
set()
num_stages()
stage()
num_success()
num_attempts()
num_auto_reject()
increment_num_attempts()
acceptance()
reset_stats()
status_header()
status()
tune()
precompute()
set()
compute()
revert()
attempt()
description()
set_description()
Trial()
- TrialVolume
- TrialRemove
- TrialMove
- TrialTranslate
- TrialRotate
- TrialFactory
- TrialTransfer
- TrialAdd
- Criteria
Criteria
Criteria()
add()
is_allowed()
before_attempt()
is_accepted()
was_accepted()
set_current_energy()
current_energy()
set_current_energy_profile()
current_energy_profile()
update_current_energy()
status_header()
status()
write()
phase()
increment_phase()
num_iterations_to_complete()
set_num_iterations_to_complete()
num_iterations()
is_complete()
set_complete()
state()
num_states()
set_expanded_state()
expanded_state()
num_expanded_states()
update()
is_equal()
is_equal()
- AlwaysReject
- Metropolis
- SeekNumParticles