v2.4
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Contents
1. Introduction
2. Data Processing Algorithms in
MOSAIC
3. Getting Started
4.
MOSAIC
GUI
5.
MOSAIC
WEB
6. Settings File
7. Database Structure and Query Syntax
8. Scripting and Advanced Features
9. Extend
MOSAIC
10. Publication Quality Figures
11. Advanced Analysis
12. Addons
13. Developer Tools
14. API Documentation
15. Bibliography
Index
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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O
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P
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Q
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R
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S
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T
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U
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W
_
__mdformat() (mosaic.process.metaEventProcessor.metaEventProcessor method)
_colnames() (mosaic.mdio.metaMDIO.metaMDIO method)
_creategenerator() (mosaic.apps.ConvertTrajIO.ConvertTrajIO method)
_d() (in module mosaic.utilities.mosaicLogFormat)
_dprop() (in module mosaic.utilities.mosaicLogFormat)
_eventsegment() (mosaic.partition.metaEventPartition.metaEventPartition method)
_filename() (mosaic.apps.ConvertTrajIO.ConvertTrajIO method)
_formatsettings() (mosaic.trajio.metaTrajIO.metaTrajIO method)
_init() (mosaic.filters.metaIOFilter.metaIOFilter method)
(mosaic.partition.metaEventPartition.metaEventPartition method)
(mosaic.process.metaEventProcessor.metaEventProcessor method)
(mosaic.trajio.metaTrajIO.metaTrajIO method)
_initdb() (mosaic.mdio.metaMDIO.metaMDIO method)
_mdHeadingDataType() (mosaic.process.metaEventProcessor.metaEventProcessor method)
_mdHeadings() (mosaic.process.metaEventProcessor.metaEventProcessor method)
_mdList() (mosaic.process.metaEventProcessor.metaEventProcessor method)
_opendb() (mosaic.mdio.metaMDIO.metaMDIO method)
_processEvent() (mosaic.process.metaEventProcessor.metaEventProcessor method)
_stop() (mosaic.partition.metaEventPartition.metaEventPartition method)
A
abfTrajIO (class in mosaic.trajio.abfTrajIO)
,
[1]
adept (class in mosaic.process.adept)
adept2State (class in mosaic.process.adept2State)
avg() (in module mosaic.utilities.util)
B
besselLowpassFilter (class in mosaic.filters.besselLowpassFilter)
binTrajIO (class in mosaic.trajio.binTrajIO)
,
[1]
C
chimeraTrajIO (class in mosaic.trajio.chimeraTrajIO)
,
[1]
closeDB() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
commonest() (in module mosaic.utilities.util)
Convert() (mosaic.apps.ConvertTrajIO.ConvertTrajIO method)
ConvertTrajIO (class in mosaic.apps.ConvertTrajIO)
convolutionFilter (class in mosaic.filters.convolutionFilter)
csvString() (mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
cusumPlus (class in mosaic.process.cusumPlus)
D
data_record (class in mosaic.mdio.sqlite3MDIO)
DataLengthSec (mosaic.trajio.metaTrajIO.metaTrajIO attribute)
decimate() (in module mosaic.utilities.util)
E
ElapsedTimeSeconds (mosaic.trajio.metaTrajIO.metaTrajIO attribute)
eventSegment (class in mosaic.partition.eventSegment)
exportToCSV() (mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
F
filter() (in module mosaic.utilities.util)
filterData() (mosaic.filters.besselLowpassFilter.besselLowpassFilter method)
(mosaic.filters.convolutionFilter.convolutionFilter method)
(mosaic.filters.metaIOFilter.metaIOFilter method)
(mosaic.filters.waveletDenoiseFilter.waveletDenoiseFilter method)
filteredData (mosaic.filters.metaIOFilter.metaIOFilter attribute)
filterFs (mosaic.filters.metaIOFilter.metaIOFilter attribute)
flagEvent() (mosaic.process.metaEventProcessor.metaEventProcessor method)
flat2() (in module mosaic.utilities.util)
format() (mosaic.utilities.mosaicLogging.MessageFormatter method)
formatoutputfiles() (mosaic.partition.eventSegment.eventSegment method)
(mosaic.partition.metaEventPartition.metaEventPartition method)
formatsettings() (mosaic.filters.besselLowpassFilter.besselLowpassFilter method)
(mosaic.filters.convolutionFilter.convolutionFilter method)
(mosaic.filters.metaIOFilter.metaIOFilter method)
(mosaic.filters.waveletDenoiseFilter.waveletDenoiseFilter method)
(mosaic.partition.eventSegment.eventSegment method)
(mosaic.partition.metaEventPartition.metaEventPartition method)
(mosaic.process.adept.adept method)
(mosaic.process.adept2State.adept2State method)
(mosaic.process.cusumPlus.cusumPlus method)
(mosaic.trajio.metaTrajIO.metaTrajIO method)
formatstats() (mosaic.partition.eventSegment.eventSegment method)
(mosaic.partition.metaEventPartition.metaEventPartition method)
FsHz (mosaic.trajio.metaTrajIO.metaTrajIO property)
FunctionTiming() (mosaic.utilities.mosaicTiming.mosaicTiming method)
G
getLogger() (mosaic.utilities.mosaicLogging.mosaicLogging static method)
getSettings() (mosaic.settings.settings method)
I
initDB() (mosaic.mdio.metaMDIO.metaMDIO method)
InvalidDataColumnError
,
[1]
InvalidEvent
,
[1]
L
LastFileProcessed (mosaic.trajio.metaTrajIO.metaTrajIO attribute)
M
mdAveragePropertiesList() (mosaic.process.adept.adept method)
(mosaic.process.adept2State.adept2State method)
(mosaic.process.cusumPlus.cusumPlus method)
(mosaic.process.metaEventProcessor.metaEventProcessor method)
mdHeadingDataType() (mosaic.process.metaEventProcessor.metaEventProcessor method)
mdHeadings() (mosaic.process.metaEventProcessor.metaEventProcessor method)
MessageFormatter (class in mosaic.utilities.mosaicLogging)
metaEventPartition (class in mosaic.partition.metaEventPartition)
metaEventProcessor (class in mosaic.process.metaEventProcessor)
metaIOFilter (class in mosaic.filters.metaIOFilter)
metaMDIO (class in mosaic.mdio.metaMDIO)
metaTrajIO (class in mosaic.trajio.metaTrajIO)
,
[1]
module
mosaic.apps.ConvertTrajIO
mosaic.apps.SingleChannelAnalysis
mosaic.filters.besselLowpassFilter
mosaic.filters.convolutionFilter
mosaic.filters.waveletDenoiseFilter
mosaic.mdio.sqlite3MDIO
mosaic.partition.eventSegment
mosaic.process.adept
mosaic.process.adept2State
mosaic.process.cusumPlus
mosaic.settings
mosaic.trajio.abfTrajIO
mosaic.trajio.binTrajIO
mosaic.trajio.chimeraTrajIO
mosaic.trajio.qdfTrajIO
mosaic.trajio.tsvTrajIO
mosaic.utilities.fit_funcs
mosaic.utilities.ionic_current_stats
mosaic.utilities.mosaicLogFormat
mosaic.utilities.mosaicLogging
mosaic.utilities.mosaicTiming
mosaic.utilities.util
mosaic.apps.ConvertTrajIO
module
mosaic.apps.SingleChannelAnalysis
module
mosaic.filters.besselLowpassFilter
module
mosaic.filters.convolutionFilter
module
mosaic.filters.waveletDenoiseFilter
module
mosaic.mdio.sqlite3MDIO
module
mosaic.partition.eventSegment
module
mosaic.process.adept
module
mosaic.process.adept2State
module
mosaic.process.cusumPlus
module
mosaic.settings
module
mosaic.trajio.abfTrajIO
module
mosaic.trajio.binTrajIO
module
mosaic.trajio.chimeraTrajIO
module
mosaic.trajio.qdfTrajIO
module
mosaic.trajio.tsvTrajIO
module
mosaic.utilities.fit_funcs
module
mosaic.utilities.ionic_current_stats
module
mosaic.utilities.mosaicLogFormat
module
mosaic.utilities.mosaicLogging
module
mosaic.utilities.mosaicTiming
module
mosaic.utilities.util
module
mosaic_property (class in mosaic.utilities.mosaicLogFormat)
mosaicLogging (class in mosaic.utilities.mosaicLogging)
mosaicTiming (class in mosaic.utilities.mosaicTiming)
O
OpenCurrentDist() (in module mosaic.utilities.ionic_current_stats)
openDB() (mosaic.mdio.metaMDIO.metaMDIO method)
P
partition() (in module mosaic.utilities.util)
PartitionEvents() (mosaic.partition.metaEventPartition.metaEventPartition method)
popfnames() (mosaic.trajio.metaTrajIO.metaTrajIO method)
previewdata() (mosaic.trajio.metaTrajIO.metaTrajIO method)
PrintCurrentTime() (mosaic.utilities.mosaicTiming.mosaicTiming method)
PrintStatistics() (mosaic.utilities.mosaicTiming.mosaicTiming method)
ProcessedFiles (mosaic.trajio.metaTrajIO.metaTrajIO attribute)
processEvent() (mosaic.process.metaEventProcessor.metaEventProcessor method)
Q
qdfTrajIO (class in mosaic.trajio.qdfTrajIO)
,
[1]
queryDB() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
R
readAnalysisInfo() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
readAnalysisLog() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
readdata() (mosaic.trajio.abfTrajIO.abfTrajIO method)
(mosaic.trajio.binTrajIO.binTrajIO method)
(mosaic.trajio.chimeraTrajIO.chimeraTrajIO method)
(mosaic.trajio.metaTrajIO.metaTrajIO method)
(mosaic.trajio.qdfTrajIO.qdfTrajIO method)
(mosaic.trajio.tsvTrajIO.tsvTrajIO method)
readSettings() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
rejectEvent() (mosaic.process.metaEventProcessor.metaEventProcessor method)
Reset() (mosaic.utilities.mosaicTiming.mosaicTiming method)
Run() (mosaic.apps.SingleChannelAnalysis.SingleChannelAnalysis method)
S
scaleData() (mosaic.trajio.binTrajIO.binTrajIO method)
(mosaic.trajio.metaTrajIO.metaTrajIO method)
(mosaic.trajio.tsvTrajIO.tsvTrajIO method)
sd() (in module mosaic.utilities.util)
selectS() (in module mosaic.utilities.util)
settings (class in mosaic.settings)
SingleChannelAnalysis (class in mosaic.apps.SingleChannelAnalysis)
sqlite3MDIO (class in mosaic.mdio.sqlite3MDIO)
Stop() (mosaic.apps.SingleChannelAnalysis.SingleChannelAnalysis method)
(mosaic.partition.metaEventPartition.metaEventPartition method)
T
time() (mosaic.utilities.mosaicTiming.mosaicTiming method)
tsvTrajIO (class in mosaic.trajio.tsvTrajIO)
,
[1]
U
update() (mosaic.mdio.sqlite3MDIO.data_record method)
W
waveletDenoiseFilter (class in mosaic.filters.waveletDenoiseFilter)
writeAnalysisInfo() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
writeAnalysisLog() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
writeEvent() (mosaic.process.metaEventProcessor.metaEventProcessor method)
writeRecord() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)
writeSettings() (mosaic.mdio.metaMDIO.metaMDIO method)
(mosaic.mdio.sqlite3MDIO.sqlite3MDIO method)