• Configuration
  • Configuration
    • serialize()
    • Configuration()
    • add_particle_type()
    • num_particle_types()
    • num_site_types()
    • num_bond_types()
    • num_angle_types()
    • num_dihedral_types()
    • particle_type()
    • type_to_file_name()
    • particle_types()
    • add()
    • model_params()
    • set_model_param()
    • set_model_param()
    • set_model_param()
    • add_model_param()
    • add_or_set_model_param()
    • set_physical_constants()
    • physical_constants()
    • unique_types()
    • unique_type()
    • unique_type()
    • max_sites_in_any_particle()
    • set_site_type()
    • site_type_to_particle_type()
    • num_site_types_per_particle_type()
    • add()
    • num_groups()
    • particle_type_to_group()
    • particle_type_to_group_create()
    • group_index()
    • group_selects()
    • group_select()
    • add_particle_of_type()
    • particle()
    • particle()
    • selection_of_all()
    • num_particles()
    • num_sites()
    • num_particles_of_type()
    • newest_particle()
    • num_sites_of_type()
    • num_sites_of_type()
    • num_sites_of_type()
    • num_sites_of_type()
    • update_positions()
    • update_positions()
    • update_positions()
    • copy_particles()
    • displace_particles()
    • displace_particle()
    • displace()
    • replace_position()
    • remove_particles()
    • remove_particle()
    • set()
    • domain()
    • set_side_lengths()
    • dimension()
    • init_wrap()
    • num_cell_lists()
    • increment_num_cell_lists()
    • revive()
    • particles()
    • select_particle()
    • newest_particle_index()
    • ghosts()
    • wrap_particle()
    • add_non_ghost_particle_of_type()
    • set_selection_physical()
    • set_property()
    • add_site_property()
    • add_or_set_site_property()
    • add_or_set_particle_type_site_property()
    • set_site_property()
    • set_site_property()
    • set_particle_type()
    • add()
    • neighbor_criteria()
    • neighbor_criteria()
    • check()
    • are_all_sites_physical()
    • is_equal()
    • check_dimensions()
    • status_header()
    • status()
    • str()
• Domain
  • Domain
    • side_lengths()
    • side_length()
    • set_side_lengths()
    • set_side_length()
    • add_side_length()
    • set_cubic()
    • is_cubic()
    • xy()
    • xz()
    • yz()
    • disable()
    • periodic()
    • dimension()
    • volume()
    • shift()
    • shift_opt()
    • wrap()
    • random_position()
    • random_position()
    • min_side_length()
    • max_side_length()
    • inscribed_sphere_diameter()
    • unwrap()
    • status_header()
    • status()
• NeighborCriteria
  • NeighborCriteria
    • is_accepted()
    • volume()
    • is_position_accepted()
    • serialize()
    • NeighborCriteria()
• PhysicalConstants
  • PhysicalConstants
    • number_density_to_grams_per_cm3()
    • grams_per_cm3_to_number_density()
    • boltzmann_constant()
    • avogadro_constant()
    • permitivity_vacuum()
    • elementary_charge()
    • ideal_gas_constant()
    • charge_conversion()
  • CODATA2018
    • boltzmann_constant()
    • avogadro_constant()
    • permitivity_vacuum()
    • elementary_charge()
  • CODATA2014
    • boltzmann_constant()
    • avogadro_constant()
    • permitivity_vacuum()
    • elementary_charge()
  • CODATA2010
    • boltzmann_constant()
    • avogadro_constant()
    • permitivity_vacuum()
    • elementary_charge()
  • PhysicalConstantsCustom
    • boltzmann_constant()
    • avogadro_constant()
    • permitivity_vacuum()
    • elementary_charge()
• Properties
  • Properties
    • add()
    • add_or_set()
    • set()
    • value()
    • value()
    • value()
    • has()
    • check()
    • names()
    • values()
    • set_value()
    • str()
    • num()
    • is_equal()
    • is_equal()
  • PropertiedEntity
    • add_property()
    • add_or_set_property()
    • set_property()
    • properties()
    • property()
    • has_property()
    • set_property()
    • set_properties()
• Bond
  • Bond
    • type()
    • set_type()
    • site_indices()
    • site()
    • num_sites()
    • add_site_index()
    • set_model()
    • model()
  • Angle
  • Dihedral
  • Improper
• ModelParam
  • ModelParam
    • add()
    • set()
    • add()
    • add()
    • mix()
    • set_mixed()
    • set_max_and_mixed()
    • value()
    • values()
    • mixed_value()
    • mixed_values()
    • size()
    • max()
    • mixed_max()
    • set_param()
    • str()
  • Epsilon
  • Sigma
  • CutOff
  • Charge
  • ModelParams
    • add()
    • mix()
    • size()
    • set()
    • set()
    • set()
    • add()
    • select()
    • index()
    • select()
    • set_cutoff_min_to_sigma()
    • set_physical_constants()
    • set_physical_constants()
    • physical_constants()
    • constants()
    • check()
    • str()
    • deep_copy()
• Group
  • Group
    • Group()
    • site_types()
    • particle_types()
    • is_dynamic()
    • is_spatial()
    • is_empty()
    • is_in()
    • is_in()
    • remove_sites()
    • site_indices()
• Select
  • Select
    • check()
    • is_equal()
    • random_particle()
    • str()
    • is_empty()
    • clear()
    • add_site()
    • set_site()
    • set_particle()
    • add_sites()
    • remove_sites()
    • add_particle()
    • add_particle()
    • num_particles()
    • num_sites()
    • add()
    • remove()
    • remove_last_particle()
    • remove_last_site()
    • remove_last_sites()
    • remove_first_site()
    • remove_first_sites()
    • remove_particle()
    • particle_indices()
    • site_indices()
    • site_indices()
    • replace_indices()
    • is_overlap()
    • is_group_empty()
    • set_group()
    • group()
    • Select()
    • Select()
    • has_positions()
    • site_positions()
    • site_properties()
    • set_site_position()
    • set_site_position()
    • add_to_site_position()
    • set_site_properties()
    • load_position()
    • load_positions()
    • load_positions_of_last()
    • geometric_center()
    • trial_state()
    • set_trial_state()
    • exclude()
    • excluded()
    • set_new_bond()
    • new_bond()
    • set_old_bond()
    • old_bond()
    • reset_excluded_and_bond()
• Site
  • Site
    • type()
    • set_type()
    • set_position()
    • add_position()
    • position()
    • position()
    • Site()
    • displace()
    • add_property()
    • is_physical()
    • set_physical()
    • add_cell()
    • set_cell()
    • cell()
    • num_cells()
    • set_anisotropic()
    • set_euler()
    • euler()
    • is_anisotropic()
• Particle
  • Particle
    • max_distance()
    • add()
    • site()
    • set_site()
    • sites()
    • num_sites()
    • remove_site()
    • is_isotropic()
    • set_site_physical()
    • check()
    • increment_site_types()
    • remove_non_unique_types()
    • set_site_type()
    • num_sites_of_type()
    • displace()
    • replace_position()
    • replace_position()
    • replace_properties()
    • add_site_property()
    • add_or_set_site_property()
    • set_site_property()
    • num_bonds()
    • bond()
    • bonds()
    • add_bond()
    • add_bond_property()
    • add_bond_model()
    • erase_bonds()
    • bond()
    • bond_neighbors()
    • num_angles()
    • angle()
    • angles()
    • add_angle()
    • add_angle_property()
    • add_angle_model()
    • angle()
    • angle_neighbors()
    • num_dihedrals()
    • dihedral()
    • dihedrals()
    • add_dihedral()
    • add_dihedral_property()
    • add_dihedral_model()
    • dihedral()
    • dihedral_neighbors()
    • type()
    • set_type()
• FileParticle
  • FileParticle
    • read()
    • read_properties()
• ParticleFactory
  • ParticleFactory
    • unique_particles()
    • unique_types()
    • check_types()
    • check_types()
    • check_site_types()
    • check_particle_types()
    • check_bond_types()
    • check_angle_types()
    • check_dihedral_types()
    • add()
    • add()
    • remove()
    • particle()
    • particles()
    • num()
    • replace_position()
    • replace_position()
    • replace_properties()
    • scale_particle_positions()
    • check()
    • num_site_types()
    • num_sites()
    • num_particle_types()
    • num_bond_types()
    • num_bonds()
    • num_angle_types()
    • num_angles()
    • num_dihedral_types()
    • num_dihedrals()
    • set_site_type()
    • remove()
    • displace()
    • model_params()
    • add()
    • set_model_param()
    • set_model_param()
    • set_model_param()
    • add_model_param()
    • add_or_set_model_param()
    • set_cutoff_min_to_sigma()
    • set_physical_constants()
    • set_site_physical()
    • add_property()
    • add_property()
    • set_property()
    • add_site_property()
    • add_or_set_site_property()
    • set_site_property()
    • set_site_property()
• VisitParticles
  • VisitParticles
  • LoopOneBody
• VisitConfiguration
  • VisitConfiguration
  • LoopConfigOneBody
• PrinterXYZ
  • PrinterXYZ
  • FileXYZ
    • load()
    • load_frame()
    • write()
    • FileXYZ()
• FileVMD
  • FileVMD
    • FileVMD()