• Model
  • Model
    • compute()
    • compute()
    • compute()
    • compute()
    • num_body()
    • precompute()
    • epsilon_index()
    • sigma_index()
    • cutoff_index()
    • charge_index()
    • serialize()
    • deserialize()
    • factory()
• BondTwoBody
  • BondTwoBody
• RigidBond
  • RigidBond
• ThermoParams
  • ThermoParams
    • set_beta()
    • beta()
    • set_pH()
    • pH()
    • add_chemical_potential()
    • set_chemical_potential()
    • chemical_potential()
    • beta_mu()
    • pressure()
    • set_pressure()
    • str()
    • is_equal()
• VisitModelInner
  • VisitModelInner
    • interacted()
• PotentialFactory
  • PotentialFactory
    • user_name()
    • set_user_name()
    • add()
    • set()
    • potentials()
    • potential()
    • num()
    • precompute()
    • precompute()
    • remove_opt_overlap()
    • energy()
    • select_energy()
    • stored_energy_profile()
    • stored_energy()
    • str()
    • change_volume()
    • revert()
    • finalize()
    • load_cache()
    • unload_cache()
    • serialize()
    • PotentialFactory()
• BondFourBody
  • BondFourBody
• RigidDihedral
  • RigidDihedral
• ModelOneBody
  • ModelOneBody
    • compute()
    • compute()
    • compute()
    • compute()
    • num_body()
    • energy()
    • energy_no_wrap()
• ModelEmpty
  • ModelEmpty
    • energy()
    • serialize()
• BondSquareWell
  • BondSquareWell
• ModelThreeBody
  • ModelThreeBody
    • compute()
    • compute()
    • compute()
    • compute()
    • num_body()
• BondVisitor
  • BondVisitor
    • BondVisitor()
• BondThreeBody
  • BondThreeBody
    • energy()
    • energy()
    • random_angle_radians()
    • random_branch()
• RigidAngle
  • RigidAngle
    • energy()
    • random_angle_radians()
    • random_branch()
• AngleSquareWell
  • AngleSquareWell
    • energy()
• Potential
  • Potential
    • group_index()
    • cell_index()
    • config()
    • configuration_index()
    • set_configuration_index()
    • Potential()
    • model()
    • Potential()
    • visit_model()
    • Potential()
    • set()
    • set_model_params()
    • set_model_param()
    • set_model_param()
    • model_params()
    • model_params()
    • does_cutoff_fit_domain()
    • precompute()
    • energy()
    • select_energy()
    • stored_energy()
    • set_stored_energy()
    • change_volume()
    • revert()
    • finalize()
    • cache()
    • load_cache()
    • unload_cache()
    • serialize()
    • Potential()
• System
  • System
    • set()
    • thermo_params()
    • set_beta()
    • change_volume()
    • delta_volume_previous()
    • total_volume()
    • revert()
    • finalize()
    • load_cache()
    • unload_cache()
    • status_header()
    • status()
    • check()
    • serialize()
    • System()
    • add()
    • num_configurations()
    • configuration()
    • configuration_index()
    • configuration()
    • configuration()
    • dimension()
    • add()
    • set_unoptimized()
    • add_to_unoptimized()
    • unoptimized()
    • potential()
    • add_to_optimized()
    • optimized()
    • add_to_reference()
    • num_references()
    • reference()
    • references()
    • reference_index()
    • potentials()
    • remove_opt_overlap()
    • add()
    • neighbor_criteria()
    • neighbor_criteria()
    • precompute()
    • unoptimized_energy()
    • energy()
    • perturbed_energy()
    • stored_energy()
    • stored_energy_profile()
    • reference_energy()
    • reference_energy()
    • initialize()
    • System()
• SynchronizeData
  • SynchronizeData
    • dble_1D()
    • int_1D()
    • int64_1D()
    • get_dble_1D()
    • get_int_1D()
    • int_2D()
    • get_int_2D()
    • get_int64_1D()
    • dble_2D()
    • get_dble_2D()
    • dble_3D()
    • get_dble_3D()
    • dble_4D()
    • get_dble_4D()
    • dble_5D()
    • get_dble_5D()
    • dble_6D()
    • get_dble_6D()
    • get_const_vpvpvpvpv()
    • get_vpvpvpvpv()
    • get_const_vvvpvpv()
    • get_vvvpvpv()
    • clear()
• EnergyMap
  • EnergyMap
    • default_value()
    • clear()
    • update()
    • is_queryable()
    • energy()
    • precompute()
    • revert()
    • finalize()
    • total_energy()
    • select_cluster()
    • is_cluster_changed()
    • neighbor_criteria()
    • neighbors()
• ModelTwoBody
  • ModelTwoBody
    • compute()
    • compute()
    • compute()
    • compute()
    • num_body()
• IdealGas
  • IdealGas
    • serialize()
• HardSphere
  • HardSphere
    • serialize()
• ModelTwoBodyFactory
  • ModelTwoBodyFactory
    • add()
    • add()
    • num()
    • model()
    • precompute()
    • serialize()
• LennardJones
  • LennardJones
    • hard_sphere_threshold()
    • serialize()
• ModelTwoBodyTable
  • ModelTwoBodyTable
    • precompute()
    • resize()
    • set()
    • set()
    • set()
    • table()
    • serialize()
• CutoffOuter
  • CutoffOuter
• VisitModel
  • VisitModel
    • energy()
    • set_energy()
    • increment_energy()
    • check_energy()
    • change_volume()
    • epsilon_index()
    • sigma_index()
    • cutoff_index()
    • charge_index()
• VisitModelBond
  • VisitModelBond
• VisitModelCutoffOuter
  • VisitModelCutoffOuter
    • VisitModelCutoffOuter()
    • VisitModelCutoffOuter()
• LongRangeCorrections
  • LongRangeCorrections
    • precompute()
• VisitModelCell
  • VisitModelCell
    • VisitModelCell()
    • cells()
    • cell_id()
    • cell_id_opt_()
    • precompute()
    • change_volume()
• VisitModelIntra
  • VisitModelIntra
• VisitModelIntraMap
  • VisitModelIntraMap
    • precompute()
    • include_map()
• DontVisitModel
  • DontVisitModel
• Cells
  • Cells
    • create()
    • num_total()
    • num()
    • num()
    • set_group()
    • group()
    • clear()
    • neighbor()
    • particles()
    • num_sites()
    • id()
    • type()
    • set_type()