• Bias
  • Bias
    • ln_bias()
    • update()
    • infrequent_update()
    • ln_prob()
    • set_ln_prob()
    • phase()
    • increment_phase()
    • cycles_to_complete()
    • set_cycles_to_complete()
• WLTM
  • WLTM
    • update()
    • cycles_to_complete()
    • set_cycles_to_complete()
    • ln_prob()
    • infrequent_update()
    • set_ln_prob()
• LnProbability
  • LnProbability
    • LnProbability()
    • value()
    • delta()
    • set_value()
    • add()
    • resize()
    • values()
    • delta_values()
    • size()
    • sum_probability()
    • sum_probability()
    • normalize()
    • minima()
    • equilibrium_objective()
    • equilibrium_objective_boundary()
    • reduce()
    • read()
• WangLandau
  • WangLandau
    • update()
    • cycles_to_complete()
    • set_cycles_to_complete()
    • ln_prob()
    • infrequent_update()
    • set_ln_prob()
• TransitionMatrix
  • TransitionMatrix
    • update()
    • min_sweeps()
    • reset_sweeps()
    • cycles_to_complete()
    • set_cycles_to_complete()
    • ln_prob()
    • set_ln_prob()
    • infrequent_update()
• Macrostate
  • Macrostate
    • Macrostate()
    • set()
    • histogram()
    • soft_max()
    • soft_min()
    • num_macrostates_in_soft_range()
    • value()
    • bin()
    • value()
    • is_allowed()
• MacrostatePosition
  • MacrostatePosition
    • MacrostatePosition()
    • value()
• WriteFileAndCheck
  • WriteFileAndCheck
• CollectionMatrix
  • CollectionMatrix
    • CollectionMatrix()
    • CollectionMatrix()
    • increment()
    • set()
    • compute_ln_prob()
    • matrix()
• MacrostateEnergy
  • MacrostateEnergy
    • MacrostateEnergy()
    • value()
• MacrostateNumParticles
  • MacrostateNumParticles
    • MacrostateNumParticles()
    • value()
• TransitionMatrixGuess
  • TransitionMatrixGuess
    • update()
    • cycles_to_complete()
    • set_cycles_to_complete()
    • ln_prob()
    • infrequent_update()
    • set_ln_prob()
• Ensemble
  • Ensemble
    • Ensemble()
    • Ensemble()
    • Ensemble()
    • ln_prob_original()
    • ln_prob()
    • macrostates()
    • phase_boundary()
    • is_phase_boundary()
    • original_conjugate()
    • reweight()
    • conjugate()
    • average()
    • average_macrostate()
  • GrandCanonicalEnsemble
    • GrandCanonicalEnsemble()
    • beta_mu()
    • betaPV()
  • ExtrapolateBetaGCE
    • ExtrapolateBetaGCE()
    • ExtrapolateBetaGCE()
    • energy()
• FlatHistogram
  • FlatHistogram
    • FlatHistogram()
    • FlatHistogram()
    • macrostate()
    • bias()
    • cycles_to_complete()
    • set_cycles_to_complete()
    • num_cycles()
    • is_complete()
    • set_complete()
    • before_attempt()
    • is_accepted()
    • write()
    • phase()
    • increment_phase()
    • state()
    • num_states()
    • set_ln_prob()
    • ln_prob()
    • update()
• Window
  • Window
    • minimum()
    • maximum()
    • num()
    • overlap()
    • segment()
    • boundaries()
• CollectionMatrixSplice
  • CollectionMatrixSplice
    • add()
    • set_size()
    • set()
    • num()
    • clone()
    • get_clone()
    • get_clones()
    • set()
    • flat_histogram()
    • collection_matrix()
    • adjust_bounds()
    • write_bounds()
    • are_all_complete()
    • run()
    • run_until_all_are_complete()
    • collection_matrix()
    • ln_prob()
    • serialize()
    • CollectionMatrixSplice()
    • write()
• WindowCustom
  • WindowCustom
    • WindowCustom()
    • segment()
    • boundaries()
    • minimum()
    • maximum()
    • num()
• Clones
  • Clones
    • add()
    • num()
    • clone()
    • get_clone()
    • get_clones()
    • set()
    • initialize()
    • initialize()
    • run_until_complete()
    • initialize_and_run_until_complete()
    • set_cycles_to_complete()
    • flat_histogram()
    • ln_prob()
    • stitch()
    • stitch()
    • serialize()
    • Clones()
• WindowExponential
  • WindowExponential
    • minimum()
    • segment()