• ComputeMoveCluster
  • ComputeMoveCluster
    • perturb_and_acceptance()
• SelectCluster
  • SelectCluster
    • SelectCluster()
    • select_cluster()
    • are_constraints_satisfied()
    • select_clusters()
    • precompute()
    • select()
• PerturbPointReflect
  • PerturbPointReflect
    • precompute()
    • update_selection()
    • move()
    • move()
• SelectParticleAVBDivalent
  • SelectParticleAVBDivalent
    • select()
    • SelectParticleAVBDivalent()
• SelectParticleAVB
  • SelectParticleAVB
    • precompute()
    • select()
    • SelectParticleAVB()
• CalculateCluster
  • CalculateCluster
    • header()
    • initialize()
    • update()
    • write()
    • cluster_size()
• AnalyzeCluster
  • AnalyzeCluster
    • header()
    • initialize()
    • update()
    • write()
    • cluster_size()
• PerturbRotateCOM
  • PerturbRotateCOM
    • move()
• PerturbMoveAVB
  • PerturbMoveAVB
    • PerturbMoveAVB()
    • move()
• PerturbAddAVB
  • PerturbAddAVB
    • PerturbAddAVB()
    • delay_add()
    • perturb()
    • revert()
    • finalize()
    • status_header()
    • status()
• TrialAVB4
  • TrialAVB4
• TrialTranslateCluster
  • TrialTranslateCluster
• TrialTransferAVBDivalent
  • TrialTransferAVBDivalent
• TrialTransferAVB
  • TrialTransferAVB
• TrialRotateCluster
  • TrialRotateCluster
• TrialRigidCluster
  • TrialRigidCluster
• TrialRemoveAVBDivalent
  • TrialRemoveAVBDivalent
• TrialRemoveAVB
  • TrialRemoveAVB
• TrialAVB2
  • TrialAVB2
  • TrialAVB2Half
    • TrialAVB2Half()
• TrialAddAVBDivalent
  • TrialAddAVBDivalent
• TrialAddAVB
  • TrialAddAVB
• EnergyMapNeighbor
  • EnergyMapNeighbor
    • energy()
    • update()
    • revert()
    • finalize()
    • total_energy()
    • select_cluster()
    • is_cluster_changed()
    • neighbors()
    • clear()
• EnergyMapNeighborCriteria
  • EnergyMapNeighborCriteria
    • update()
    • is_queryable()
• EnergyMapAll
  • EnergyMapAll
    • energy()
    • revert()
    • finalize()
    • select_cluster()
    • is_cluster_changed()
    • neighbors()
• EnergyMapAllCriteria
  • EnergyMapAllCriteria
    • update()
    • is_queryable()
• ComputeRemoveAVBDivalent
  • ComputeRemoveAVBDivalent
    • ComputeRemoveAVBDivalent()
    • perturb_and_acceptance()
• ComputeRemoveAVB
  • ComputeRemoveAVB
    • perturb_and_acceptance()
• ComputeAVB4
  • ComputeAVB4
    • perturb_and_acceptance()
• ComputeAVB2
  • ComputeAVB2
    • ComputeAVB2()
    • probability_out_to_in()
    • perturb_and_acceptance()
• ComputeAddAVBDivalent
  • ComputeAddAVBDivalent
    • ComputeAddAVBDivalent()
    • perturb_and_acceptance()
• ComputeAddAVB
  • ComputeAddAVB
    • perturb_and_acceptance()
• ComputeGCA
  • ComputeGCA
    • perturb_and_acceptance()