• SelectBranch
  • SelectBranch
    • precompute()
• SelectSiteOfType
  • SelectSiteOfType
    • SelectSiteOfType()
    • random_site_in_particle()
    • select()
• SelectParticlePivot
  • SelectParticlePivot
    • precompute()
    • select()
• SelectPerturbed
  • SelectPerturbed
    • select()
• SelectTwoSites
  • SelectTwoSites
    • mobile_site()
    • mobile_site2()
    • precompute()
    • select()
• PerturbSiteType
  • PerturbSiteType
    • PerturbSiteType()
    • set_site_type()
    • perturb()
    • revert()
    • finalize()
    • status_header()
    • status()
• SelectSegment
  • SelectSegment
    • max_length()
    • random_segment_in_particle()
    • select()
• SelectEndSegment
  • SelectEndSegment
    • precompute()
    • random_end_segment_in_particle()
    • select()
• SelectCrankshaftSmall
  • SelectCrankshaftSmall
    • precompute()
    • select()
• PerturbToAnchor
  • PerturbToAnchor
    • move()
• PerturbPositionSwap
  • PerturbPositionSwap
    • move()
• TrialParticlePivot
  • TrialParticlePivot
• TrialCrankshaftSmall
  • TrialCrankshaftSmall
• TrialCrankshaft
  • TrialCrankshaft
• TrialReptate
  • TrialReptate
    • TrialReptate()
• TrialPivot
  • TrialPivot
• TrialReptateUnopt
  • TrialReptateUnopt
  • TrialReptateUnoptHalf
    • precompute()
    • TrialReptateUnoptHalf()
• TrialGrow
  • TrialGrow
    • TrialGrow()
  • TrialGrowFile
• TrialGrowLinear
  • TrialGrowLinear
    • TrialGrowLinear()
    • precompute()
• TrialSwapSites
  • TrialSwapSites
• PerturbReptate
  • PerturbReptate
    • move()
    • finalize()
• PerturbConnector
  • PerturbConnector
    • move()
• PerturbBranch
  • PerturbBranch
    • precompute()
    • place_in_branch()
    • move()
• PerturbParticlePivot
  • PerturbParticlePivot
    • move()
• PerturbCrankshaftSmall
  • PerturbCrankshaftSmall
    • move()
• PerturbPivot
  • PerturbPivot
    • move()
• PerturbCrankshaft
  • PerturbCrankshaft
    • move()
• PerturbLibrary
  • PerturbLibrary
    • PerturbLibrary()
    • precompute()
    • xyz()
    • move()
• PerturbDistanceAngleConnector
  • PerturbDistanceAngleConnector
• SelectReptate
  • SelectReptate
    • SelectReptate()
    • precompute()
    • mid_stage()
• AnalyzeBonds
  • AnalyzeBonds
    • update()
    • initialize()
    • bond()
    • angle()
    • dihedral()
    • bond_hist()
    • angle_hist()
    • dihedral_hist()
    • write()
• EndToEndDistance
  • EndToEndDistance
    • header()
    • initialize()
    • update()
    • write()
    • end_to_end_distance()
• RadiusOfGyration
  • RadiusOfGyration
    • header()
    • initialize()
    • update()
    • write()
    • radius_of_gyration()
    • histogram()
    • rg_e()
• GhostTrialGrow
  • GhostTrialGrow
    • header()
    • initialize()
    • update()
    • write()