Index

Symbols

--default-host rme-run command line option --file rme-log command line option --force-download rme-sync command line option --force-relink rme-sync command line option --max-threads rme-release command line option rme-run command line option rme-sync command line option

--no-blobs rme-release command line option --repeat-release rme-release command line option --show-attrs rme-map command line option --update-all rme-sync command line option --version rme command line option --workspace rme-release command line option

_

__DEFAULT_HOST rme-sync command line option

A

active (rmellipse.propagators.Propagator attribute) active_workflow (rmellipse.workflows.ProjectSettings property) add_child() (rmellipse.utils.GroupSaveable method) add_converter() (rmellipse.arrschema.ArrSchemaRegistry method) add_data_pointer() (rmellipse.workflows.workflowtree.WorkflowTree method) add_edge() (rmellipse.workflows.workflowtree.WorkflowTree method) add_job() (rmellipse.workflows.workflowtree.WorkflowTree method) add_loader() (rmellipse.arrschema.ArrSchemaRegistry method) add_mc_sample() (rmellipse.uobjects.RMEMeas method) add_saver() (rmellipse.arrschema.ArrSchemaRegistry method)

add_schema() (rmellipse.arrschema.ArrSchemaRegistry method) add_umech() (rmellipse.uobjects.RMEMeas method) annotate() (in module rmellipse.arrschema) archive_path (rmellipse.workflows.archive_interface.FileSystemArchive attribute) ArchiveInterface (class in rmellipse.workflows.archive_interface) arrschema() (in module rmellipse.arrschema) ArrSchemaRegistry (class in rmellipse.arrschema) as_schema() (in module rmellipse.arrschema) assign_categories() (rmellipse.uobjects.RMEMeas method) assign_categories_to_all() (rmellipse.uobjects.RMEMeas method) attrs (rmellipse.utils.GroupSaveable attribute)

C

cache_dir (rmellipse.workflows.local_interfaces.CacheInterface attribute) CacheInterface (class in rmellipse.workflows.local_interfaces) cast_covcats() (rmellipse.uobjects.RMEMeas method) cast_umechids() (rmellipse.uobjects.RMEMeas method) categorize_by() (rmellipse.uobjects.RMEMeas method) CDCSArchive (class in rmellipse.workflows.archive_interface) children (rmellipse.utils.GroupSaveable attribute) chunked_sha() (in module rmellipse.workflows.archive_interface) CODE (rmellipse.workflows.FILE_TYPES attribute) combine() (rmellipse.propagators.Propagator method) (rmellipse.propagators.RMEProp method) combine_across_dim() (rmellipse.propagators.Propagator method) (rmellipse.propagators.RMEProp method) commands (rmellipse.workflows.workflowtree.Job property) config (rmellipse.workflows.workflowtree.Job attribute)

confint() (rmellipse.uobjects.RMEMeas method) convert() (in module rmellipse.arrschema) convert_float_to_int() (in module rmellipse.arrschema.examples) convert_zeros_to_s2p_ri() (in module rmellipse.arrschema.examples) coords (rmellipse.uobjects.RMEMeas property) copy() (rmellipse.uobjects.RMEMeas method) (rmellipse.uobjects.UObj class method) cov (rmellipse.uobjects.RMEMeas property) covariance_dict (rmellipse.utils.MUFMeasParser attribute) covcats (rmellipse.uobjects.RMEMeas property) covdofs (rmellipse.uobjects.RMEMeas property) create_empty_categories() (rmellipse.uobjects.RMEMeas method) cull_cov() (rmellipse.uobjects.RMEMeas method) curator (rmellipse.workflows.archive_interface.CDCSArchive attribute) curvefit() (rmellipse.uobjects.RMEMeas method) curveval() (rmellipse.uobjects.RMEMeas method)

D

data_env_dir (rmellipse.workflows.ProjectSettings property) data_env_packages (rmellipse.workflows.ProjectSettings property) data_pointers (rmellipse.workflows.workflowtree.WorkflowTree property) DataPointer (class in rmellipse.workflows.workflowtree) DATASET (rmellipse.workflows.FILE_TYPES attribute) DATASETS (rmellipse.workflows.WORKFLOW_SPECIAL_KEYS attribute) datasets (rmellipse.workflows.WorkflowConfig property) default_host (rmellipse.workflows.RMESettings property) dict_from_group() (rmellipse.uobjects.RMEMeas class method) dims (rmellipse.uobjects.RMEMeas property)

DIRECTORY (rmellipse.workflows.DIRECTORY_ITEMS attribute) DIRECTORY_ITEMS (class in rmellipse.workflows) DOC (rmellipse.workflows.FILE_TYPES attribute) dof() (rmellipse.uobjects.RMEMeas method) dotrmedir (rmellipse.workflows.ProjectSettings property) download_blob() (rmellipse.workflows.archive_interface.ArchiveInterface method) (rmellipse.workflows.archive_interface.CDCSArchive method) (rmellipse.workflows.archive_interface.FileSystemArchive method) download_release() (rmellipse.workflows.archive_interface.ArchiveInterface method) dtype (rmellipse.uobjects.RMEMeas property)

E

edges (rmellipse.workflows.workflowtree.WorkflowTree property) env_variables (rmellipse.workflows.WorkflowConfig attribute) envdir (rmellipse.workflows.local_interfaces.EnvInterface attribute)

EnvInterface (class in rmellipse.workflows.local_interfaces) etree (rmellipse.utils.MUFMeasParser attribute) execute_concurrent_jobs() (in module rmellipse.workflows.workflowtree) expand_variables() (rmellipse.workflows.WorkflowConfig method)

F

FILE (rmellipse.workflows.DIRECTORY_ITEMS attribute) file_ext (rmellipse.utils.MUFMeasParser attribute) FILE_TYPES (class in rmellipse.workflows) FileSystemArchive (class in rmellipse.workflows.archive_interface) find_schema() (rmellipse.arrschema.ArrSchemaRegistry method)

formatting_keys (rmellipse.workflows.WorkflowConfig property) from_dist() (rmellipse.uobjects.RMEMeas class method) from_h5() (rmellipse.uobjects.RMEMeas class method) from_nom() (rmellipse.uobjects.RMEMeas class method) from_workflow_config() (rmellipse.workflows.workflowtree.WorkflowTree class method) from_xml() (rmellipse.uobjects.RMEMeas class method)

G

get_cached_release_dir() (rmellipse.workflows.local_interfaces.CacheInterface method) get_credentials() (in module rmellipse.workflows.archive_interface) get_header() (in module rmellipse.arrschema.examples) get_host_settings() (rmellipse.workflows.RMESettings method) get_interface() (in module rmellipse.workflows.archive_interface) get_release_records (rmellipse.workflows.archive_interface.ArchiveInterface attribute)

get_release_records() (rmellipse.workflows.archive_interface.CDCSArchive method) (rmellipse.workflows.archive_interface.FileSystemArchive method) get_root() (rmellipse.utils.GroupSaveable method) get_unique_categories() (rmellipse.uobjects.RMEMeas method) group_combine_mechanisms() (rmellipse.uobjects.RMEMeas method) GroupSaveable (class in rmellipse.utils)

H

H5_DATASET (rmellipse.workflows.DIRECTORY_ITEMS attribute) H5_FILE (rmellipse.workflows.DIRECTORY_ITEMS attribute) H5_GROUP (rmellipse.workflows.DIRECTORY_ITEMS attribute) handle_common_grid() (rmellipse.propagators.RMEProp method)

HOST rme-release command line option host (rmellipse.workflows.archive_interface.ArchiveInterface attribute) (rmellipse.workflows.archive_interface.FileSystemArchive attribute) hosts (rmellipse.workflows.RMESettings property)

I

import_converter() (rmellipse.arrschema.ArrSchemaRegistry method) import_loader() (rmellipse.arrschema.ArrSchemaRegistry method) import_saver() (rmellipse.arrschema.ArrSchemaRegistry method) in_cache() (rmellipse.workflows.local_interfaces.CacheInterface method) in_env() (rmellipse.workflows.local_interfaces.EnvInterface method) init_from_data() (rmellipse.utils.MUFMeasParser method) install_files_namespace() (rmellipse.workflows.local_interfaces.EnvInterface method) install_release() (rmellipse.workflows.local_interfaces.EnvInterface method) installed_in_packages() (rmellipse.workflows.local_interfaces.EnvInterface method)

installed_in_registry() (rmellipse.workflows.local_interfaces.EnvInterface method) interp() (rmellipse.uobjects.RMEMeas method) is_big_object (rmellipse.utils.GroupSaveable attribute) is_rmeproject() (rmellipse.workflows.ProjectSettings static method) is_url() (in module rmellipse.workflows.archive_interface) isel() (rmellipse.uobjects.RMEMeas method) iter_blobable() (in module rmellipse.workflows.extras) iter_data_pointer_paths() (rmellipse.workflows.workflowtree.WorkflowTree method) iter_topological_groups() (rmellipse.workflows.workflowtree.WorkflowTree method)

J

JOB rme-log command line option Job (class in rmellipse.workflows.workflowtree)

JOB (rmellipse.workflows.WORKFLOW_SPECIAL_KEYS attribute) JobFailure jobs (rmellipse.workflows.WorkflowConfig property) (rmellipse.workflows.workflowtree.WorkflowTree property)

L

load() (in module rmellipse.arrschema) (rmellipse.utils.GroupSaveable class method) load_csv_like_s2p_ri() (in module rmellipse.arrschema.examples) load_group_saveable() (in module rmellipse.arrschema.examples) load_object() (in module rmellipse.utils)

loaders (rmellipse.arrschema.ArrSchemaRegistry property) loc (rmellipse.uobjects.RMEMeas property) logfile (rmellipse.workflows.workflowtree.Job attribute) look_up_node() (rmellipse.utils.GroupSaveable method) lookup_table (rmellipse.utils.GroupSaveable attribute)

M

make_globs() (in module rmellipse.workflows.extras) make_registry() (rmellipse.workflows.local_interfaces.EnvInterface method) make_umechs_unique() (rmellipse.uobjects.RMEMeas method) matches_any() (in module rmellipse.workflows.extras) mc (rmellipse.uobjects.RMEMeas property) message (rmellipse.uobjects.RMEMeasFormatError attribute) MISC (rmellipse.workflows.FILE_TYPES attribute) module rmellipse rmellipse.arrschema rmellipse.arrschema.examples rmellipse.propagators rmellipse.uobjects rmellipse.utils rmellipse.workflows rmellipse.workflows.archive_interface rmellipse.workflows.extras rmellipse.workflows.local_interfaces rmellipse.workflows.workflowtree

montecarlo_dict (rmellipse.utils.MUFMeasParser attribute) MUFMeasParser (class in rmellipse.utils)

N

name (rmellipse.uobjects.RMEMeas property) (rmellipse.utils.MUFMeasParser attribute) (rmellipse.workflows.workflowtree.DataPointer property) (rmellipse.workflows.workflowtree.Job property)

nodes (rmellipse.workflows.workflowtree.WorkflowTree property) nom (rmellipse.uobjects.RMEMeas property) (rmellipse.uobjects.UObj property) nominal_dict (rmellipse.utils.MUFMeasParser attribute)

O

open_data() (rmellipse.utils.MUFMeasParser method)

open_meas() (rmellipse.utils.MUFMeasParser method)

P

packages_dir (rmellipse.workflows.local_interfaces.EnvInterface attribute) parent (rmellipse.utils.GroupSaveable attribute) parmameter_dict (rmellipse.utils.MUFMeasParser attribute) path (rmellipse.workflows.workflowtree.DataPointer property) polyfit() (rmellipse.uobjects.RMEMeas method) polyval() (rmellipse.uobjects.RMEMeas method) print_categories() (rmellipse.uobjects.RMEMeas method) process_and_upload_blob() (rmellipse.workflows.archive_interface.ArchiveInterface method) (rmellipse.workflows.archive_interface.CDCSArchive method) (rmellipse.workflows.archive_interface.FileSystemArchive method)

processlogdir (rmellipse.workflows.ProjectSettings property) project_dir (rmellipse.workflows.ProjectSettings property) project_map (rmellipse.workflows.ProjectSettings property) project_settings (rmellipse.workflows.WorkflowConfig attribute) ProjectSettings (class in rmellipse.workflows) propagate() (rmellipse.propagators.Propagator method) (rmellipse.propagators.RMEProp method) Propagator (class in rmellipse.propagators)

R

raw (rmellipse.workflows.WorkflowConfig attribute) RELEASE (rmellipse.workflows.WORKFLOW_SPECIAL_KEYS attribute) release (rmellipse.workflows.WorkflowConfig property) (rmellipse.workflows.workflowtree.WorkflowTree property) release_package_dir() (rmellipse.workflows.local_interfaces.EnvInterface method) release_reg_dir() (rmellipse.workflows.local_interfaces.EnvInterface method) release_version (rmellipse.workflows.WorkflowConfig property) ReleaseRecordNotFoundError requires_env (rmellipse.workflows.ProjectSettings property) (rmellipse.workflows.WorkflowConfig property) requires_files (rmellipse.workflows.ProjectSettings property) (rmellipse.workflows.WorkflowConfig property) requires_releases (rmellipse.workflows.ProjectSettings property) (rmellipse.workflows.WorkflowConfig property) result (rmellipse.workflows.workflowtree.Job attribute) rm_broken_packages() (rmellipse.workflows.local_interfaces.EnvInterface method) rm_cached_release() (rmellipse.workflows.local_interfaces.CacheInterface method) rm_release() (rmellipse.workflows.local_interfaces.EnvInterface method) rme command line option --version rme-log command line option --file JOB rme-map command line option --show-attrs WORKFLOW_FILE rme-release command line option --max-threads --no-blobs --repeat-release --workspace HOST WORKFLOW_FILE rme-run command line option --default-host --max-threads WORKFLOW_FILE

rme-sync command line option --force-download --force-relink --max-threads --update-all __DEFAULT_HOST WORKFLOW_FILE rmellipse module rmellipse.arrschema module rmellipse.arrschema.examples module rmellipse.propagators module rmellipse.uobjects module rmellipse.utils module rmellipse.workflows module rmellipse.workflows.archive_interface module rmellipse.workflows.extras module rmellipse.workflows.local_interfaces module rmellipse.workflows.workflowtree module RMEMeas (class in rmellipse.uobjects) RMEMeasFormatError rmeproj_file (rmellipse.workflows.ProjectSettings property) RMEProp (class in rmellipse.propagators) RMESettings (class in rmellipse.workflows) rmesettings (rmellipse.workflows.ProjectSettings property) run() (rmellipse.workflows.workflowtree.Job method)

S

save() (in module rmellipse.arrschema) (rmellipse.utils.GroupSaveable method) save_data() (rmellipse.utils.MUFMeasParser method) save_group_saveable() (in module rmellipse.arrschema.examples) save_meas() (rmellipse.utils.MUFMeasParser method) save_object() (in module rmellipse.utils) savers (rmellipse.arrschema.ArrSchemaRegistry property) schema (rmellipse.arrschema.ArrSchemaRegistry property) SCHEMAS (in module rmellipse.workflows) sel() (rmellipse.uobjects.RMEMeas method)

set_active() (rmellipse.propagators.Propagator method) settings (rmellipse.propagators.Propagator attribute) (rmellipse.propagators.RMEProp attribute) shape (rmellipse.uobjects.RMEMeas property) show_loaders() (rmellipse.arrschema.ArrSchemaRegistry method) show_schema() (rmellipse.arrschema.ArrSchemaRegistry method) started (rmellipse.workflows.workflowtree.Job attribute) stdunc (rmellipse.uobjects.UObj property) stdunc() (rmellipse.uobjects.RMEMeas method) supports_repeat_releases (rmellipse.workflows.archive_interface.CDCSArchive attribute)

T

thread (rmellipse.workflows.workflowtree.Job property) title (rmellipse.workflows.WorkflowConfig property)

to_h5() (rmellipse.uobjects.RMEMeas method) to_xml() (rmellipse.uobjects.RMEMeas method)

U

umech_id (rmellipse.uobjects.RMEMeas property) uncbounds() (rmellipse.uobjects.RMEMeas method) UninitializedRMEProject UObj (class in rmellipse.uobjects) update_lookup_table() (rmellipse.utils.GroupSaveable method) update_parents() (rmellipse.utils.GroupSaveable method)

upload_blobs_and_update_mapping() (rmellipse.workflows.archive_interface.ArchiveInterface method) upload_release_record() (rmellipse.workflows.archive_interface.ArchiveInterface method) (rmellipse.workflows.archive_interface.CDCSArchive method) (rmellipse.workflows.archive_interface.FileSystemArchive method) usel() (rmellipse.uobjects.RMEMeas method) user (rmellipse.workflows.archive_interface.ArchiveInterface attribute)

V

validate() (in module rmellipse.arrschema)

validate_datapointers() (in module rmellipse.workflows.workflowtree) ValidationError

W

wft_jsondir (rmellipse.workflows.ProjectSettings property) with_suffixes_of() (rmellipse.workflows.local_interfaces.EnvInterface static method) WORKFLOW (rmellipse.workflows.FILE_TYPES attribute) WORKFLOW_FILE rme-map command line option rme-release command line option rme-run command line option rme-sync command line option

WORKFLOW_SPECIAL_KEYS (class in rmellipse.workflows) WorkflowConfig (class in rmellipse.workflows) WorkflowTree (class in rmellipse.workflows.workflowtree)

Z

zeros() (in module rmellipse.arrschema)