masskit_ai.test_fixtures package

Module contents

masskit_ai.test_fixtures.SRM1950_lumos_short_parquet_ai(data_dir, tmpdir_factory)

masskit_ai.test_fixtures.config_predict_airi_csv(tmpdir_factory, data_dir, predicted_airi_csv)

masskit_ai.test_fixtures.config_predict_peptide(predicted_human_uniprot_trunc_parquet, human_uniprot_trunc_parquet)

masskit_ai.test_fixtures.data_dir()

the directory containing the test data files

Note that trying to get data from the masskit/tests/data directory is not straightforward as there is no generic way to find the path to this directory as it is not installed. The workaround is to copy the needed datafiles from masskit/tests/data to masskit_ai/tests/data

masskit_ai.test_fixtures.human_uniprot_trunc_fasta(data_dir)

masskit_ai.test_fixtures.human_uniprot_trunc_parquet(human_uniprot_trunc_fasta, tmpdir_factory)

masskit_ai.test_fixtures.predicted_airi_csv(tmpdir_factory)

masskit_ai.test_fixtures.predicted_human_uniprot_trunc_parquet(tmpdir_factory)

masskit_ai.test_fixtures.test_new_sdf_parquet(data_dir, tmpdir_factory)