types

Attributes:

• Arr (TypeAlias) –

  Possible acceptable array backends

• FeatMat (TypeAlias) –

  Boolean feature matrix (rows=observations, cols=features)

• SimsMat (TypeAlias) –

  Feature similarity matrix (rows,cols=features)

• FPopts (TypeAlias) –

  Variations on what to return from running Forest Pursuit.

• Number (TypeAlias) –

  An individual number, for type-checked parameters to functions

• PsdCtOpts (TypeAlias) –

  derived/empirical values for the pseudocount prior

• PsdCts (TypeAlias) –

  Allowed priors for beta-binonial estimates

Arr: TypeAlias = SparseArray | sparray | ndarray

FeatMat: TypeAlias = Bool[Arr, 'obs feat']

SimsMat: TypeAlias = Num[Arr, 'feat feat']

FPopts: TypeAlias = Literal[
    "edge-prob", "interaction", "forest-max", "counts"
]

Number: TypeAlias = float | int

PsdCtOpts: TypeAlias = Literal['min-connect', 'zero-sum']

PsdCts: TypeAlias = (
    tuple[Number, Number]
    | tuple[PsdCtOpts, Number]
    | PsdCtOpts
    | Number
)