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Class: Experiment with Instrument (ExperimentWithInstrument) (Abstract)

Holds information about a specific type of Microbial Strain experiment that uses an instrument. The specific metadata for each type of experiment is controlled by "template data classes"

  • NOTE: this is an abstract class and should not be instantiated directly

URI: microbial_experiment_schema:ExperimentWithInstrument

classDiagram class ExperimentWithInstrument click ExperimentWithInstrument href "../ExperimentWithInstrument" ExperimentWithData <|-- ExperimentWithInstrument click ExperimentWithData href "../ExperimentWithData" ExperimentWithInstrument <|-- CytoFLEXAcquisition click CytoFLEXAcquisition href "../CytoFLEXAcquisition" ExperimentWithInstrument <|-- NucleicAcidExtraction click NucleicAcidExtraction href "../NucleicAcidExtraction" ExperimentWithInstrument <|-- GenericTemplateDeprecated click GenericTemplateDeprecated href "../GenericTemplateDeprecated" ExperimentWithInstrument <|-- MicroscopyAcquisition click MicroscopyAcquisition href "../MicroscopyAcquisition" ExperimentWithInstrument <|-- GenericTemplate click GenericTemplate href "../GenericTemplate" ExperimentWithInstrument <|-- CoulterAcquisition click CoulterAcquisition href "../CoulterAcquisition" ExperimentWithInstrument <|-- BactoBoxAcquisition click BactoBoxAcquisition href "../BactoBoxAcquisition" ExperimentWithInstrument : core_data_path ExperimentWithInstrument --> "1" StringValue : core_data_path click StringValue href "../StringValue" ExperimentWithInstrument : data_acquisition_date ExperimentWithInstrument --> "1" DateValue : data_acquisition_date click DateValue href "../DateValue" ExperimentWithInstrument : elab_experiment ExperimentWithInstrument --> "1" ELabExperiment : elab_experiment click ELabExperiment href "../ELabExperiment" ExperimentWithInstrument : instrument_id ExperimentWithInstrument --> "1" ELabItemValue : instrument_id click ELabItemValue href "../ELabItemValue" ExperimentWithInstrument : operator_id ExperimentWithInstrument --> "1" OperatorIDValue : operator_id click OperatorIDValue href "../OperatorIDValue" ExperimentWithInstrument : project_id ExperimentWithInstrument --> "1" ELabItemValue : project_id click ELabItemValue href "../ELabItemValue" ExperimentWithInstrument : specific_data_path ExperimentWithInstrument --> "1" StringValue : specific_data_path click StringValue href "../StringValue" ExperimentWithInstrument : template_name ExperimentWithInstrument --> "1" StringValue : template_name click StringValue href "../StringValue"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
instrument_id 1
ELabItemValue		 The instrument used to acquire the data in an experiment (linked item from EL... direct
core_data_path 1
StringValue		 Portion of the data pathway that will not change as the template is used to g... ExperimentWithData
specific_data_path 1
StringValue		 Portion of the data pathway specific to data from a given experimental record... ExperimentWithData
data_acquisition_date 1
DateValue		 Date on which data were acquired according to eLabFTW record Experiment
elab_experiment 1
ELabExperiment		 A self-reference to this experiment record Experiment
operator_id 1
OperatorIDValue		 Instrument operator during an experiment (a linked item from ELabFTW) Experiment
project_id 1
ELabItemValue		 The project that an experiment supports (link to an ELabFTW item) Experiment
template_name 1
StringValue		 The name of the template used to collect metadata for an experiment in ELabFT... Experiment

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/usnistgov/microbial-experiment-schema

Mappings

Mapping Type Mapped Value
self microbial_experiment_schema:ExperimentWithInstrument
native microbial_experiment_schema:ExperimentWithInstrument

LinkML Source

Direct

name: ExperimentWithInstrument
description: Holds information about a specific type of Microbial Strain experiment
  that uses an instrument. The specific metadata for each type of experiment is controlled
  by "template data classes"
title: Experiment with Instrument
from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
is_a: ExperimentWithData
abstract: true
slots:
- instrument_id

Induced

name: ExperimentWithInstrument
description: Holds information about a specific type of Microbial Strain experiment
  that uses an instrument. The specific metadata for each type of experiment is controlled
  by "template data classes"
title: Experiment with Instrument
from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
is_a: ExperimentWithData
abstract: true
attributes:
  instrument_id:
    name: instrument_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The instrument used to acquire the data in an experiment (linked
      item from ELabFTW)
    title: InstrumentID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: instrument_id
    owner: ExperimentWithInstrument
    domain_of:
    - ExperimentWithInstrument
    - ExperimentWithInstrumentNoData
    range: ELabItemValue
    required: true
  core_data_path:
    name: core_data_path
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
      read_only:
        tag: read_only
        value: true
    description: Portion of the data pathway that will not change as the template
      is used to generate experimental records (should be network-resolvable)
    title: CoreDataPath
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: core_data_path
    owner: ExperimentWithInstrument
    domain_of:
    - ExperimentWithData
    range: StringValue
    required: true
  specific_data_path:
    name: specific_data_path
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Portion of the data pathway specific to data from a given experimental
      record  (should be a sub-path of the location specified by `CoreDataPath`)
    title: SpecificDataPath
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: specific_data_path
    owner: ExperimentWithInstrument
    domain_of:
    - ExperimentWithData
    range: StringValue
    required: true
  data_acquisition_date:
    name: data_acquisition_date
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Date on which data were acquired according to eLabFTW record
    title: DataAcquisitionDate
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: data_acquisition_date
    owner: ExperimentWithInstrument
    domain_of:
    - Experiment
    range: DateValue
    required: true
  elab_experiment:
    name: elab_experiment
    annotations:
      elabftw_user_input:
        tag: elabftw_user_input
        value: false
    description: A self-reference to this experiment record
    title: ELabFTW Experiment
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: elab_experiment
    owner: ExperimentWithInstrument
    domain_of:
    - Experiment
    range: ELabExperiment
    required: true
    inlined: true
    inlined_as_list: true
  operator_id:
    name: operator_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Instrument operator during an experiment (a linked item from ELabFTW)
    title: OperatorID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: operator_id
    owner: ExperimentWithInstrument
    domain_of:
    - Experiment
    range: OperatorIDValue
    required: true
  project_id:
    name: project_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The project that an experiment supports (link to an ELabFTW item)
    title: ProjectID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: project_id
    owner: ExperimentWithInstrument
    domain_of:
    - Experiment
    range: ELabItemValue
    required: true
  template_name:
    name: template_name
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      read_only:
        tag: read_only
        value: true
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The name of the template used to collect metadata for an experiment
      in ELabFTW. This value controls what specific metadata fields are allowed.
    title: TemplateName
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: template_name
    owner: ExperimentWithInstrument
    domain_of:
    - Experiment
    range: StringValue
    required: true