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Class: Experiment (Experiment) (Abstract)

Holds information about a specific type of Microbial Strain experiment. The specific metadata for each type of experiment is controlled by "template data classes"

  • NOTE: this is an abstract class and should not be instantiated directly

URI: microbial_experiment_schema:Experiment

classDiagram class Experiment click Experiment href "../Experiment" Experiment <|-- ExperimentWithData click ExperimentWithData href "../ExperimentWithData" Experiment <|-- ExperimentWithInstrumentNoData click ExperimentWithInstrumentNoData href "../ExperimentWithInstrumentNoData" Experiment <|-- CellCultureInBroth click CellCultureInBroth href "../CellCultureInBroth" Experiment <|-- FormaldehydeFixation click FormaldehydeFixation href "../FormaldehydeFixation" Experiment <|-- LogCOMETSamplePrep click LogCOMETSamplePrep href "../LogCOMETSamplePrep" Experiment <|-- DifcoAmendedSporulationAgarProtocol click DifcoAmendedSporulationAgarProtocol href "../DifcoAmendedSporulationAgarProtocol" Experiment <|-- InitiateGrowthOfBSpizizenii click InitiateGrowthOfBSpizizenii href "../InitiateGrowthOfBSpizizenii" Experiment <|-- SlideCleaning click SlideCleaning href "../SlideCleaning" Experiment : data_acquisition_date Experiment --> "1" DateValue : data_acquisition_date click DateValue href "../DateValue" Experiment : elab_experiment Experiment --> "1" ELabExperiment : elab_experiment click ELabExperiment href "../ELabExperiment" Experiment : operator_id Experiment --> "1" OperatorIDValue : operator_id click OperatorIDValue href "../OperatorIDValue" Experiment : project_id Experiment --> "1" ELabItemValue : project_id click ELabItemValue href "../ELabItemValue" Experiment : template_name Experiment --> "1" StringValue : template_name click StringValue href "../StringValue"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
data_acquisition_date 1
DateValue		 Date on which data were acquired according to eLabFTW record direct
elab_experiment 1
ELabExperiment		 A self-reference to this experiment record direct
operator_id 1
OperatorIDValue		 Instrument operator during an experiment (a linked item from ELabFTW) direct
project_id 1
ELabItemValue		 The project that an experiment supports (link to an ELabFTW item) direct
template_name 1
StringValue		 The name of the template used to collect metadata for an experiment in ELabFT... direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/usnistgov/microbial-experiment-schema

Mappings

Mapping Type Mapped Value
self microbial_experiment_schema:Experiment
native microbial_experiment_schema:Experiment

LinkML Source

Direct

name: Experiment
description: Holds information about a specific type of Microbial Strain experiment.
  The specific metadata for each type of experiment is controlled by "template data
  classes"
title: Experiment
from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
abstract: true
slots:
- data_acquisition_date
- elab_experiment
- operator_id
- project_id
- template_name
tree_root: true

Induced

name: Experiment
description: Holds information about a specific type of Microbial Strain experiment.
  The specific metadata for each type of experiment is controlled by "template data
  classes"
title: Experiment
from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
abstract: true
attributes:
  data_acquisition_date:
    name: data_acquisition_date
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Date on which data were acquired according to eLabFTW record
    title: DataAcquisitionDate
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: data_acquisition_date
    owner: Experiment
    domain_of:
    - Experiment
    range: DateValue
    required: true
  elab_experiment:
    name: elab_experiment
    annotations:
      elabftw_user_input:
        tag: elabftw_user_input
        value: false
    description: A self-reference to this experiment record
    title: ELabFTW Experiment
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: elab_experiment
    owner: Experiment
    domain_of:
    - Experiment
    range: ELabExperiment
    required: true
    inlined_as_list: true
  operator_id:
    name: operator_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Instrument operator during an experiment (a linked item from ELabFTW)
    title: OperatorID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: operator_id
    owner: Experiment
    domain_of:
    - Experiment
    range: OperatorIDValue
    required: true
  project_id:
    name: project_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The project that an experiment supports (link to an ELabFTW item)
    title: ProjectID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: project_id
    owner: Experiment
    domain_of:
    - Experiment
    range: ELabItemValue
    required: true
  template_name:
    name: template_name
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      read_only:
        tag: read_only
        value: true
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The name of the template used to collect metadata for an experiment
      in ELabFTW. This value controls what specific metadata fields are allowed.
    title: TemplateName
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: template_name
    owner: Experiment
    domain_of:
    - Experiment
    range: StringValue
    required: true
tree_root: true