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Class: CytoFLEX_VolumeCalibration (CytoFLEXVolumeCalibration)

Metadata describing a volume calibration using the CytoFLEX instrument

URI: microbial_experiment_schema:CytoFLEXVolumeCalibration

classDiagram class CytoFLEXVolumeCalibration click CytoFLEXVolumeCalibration href "../CytoFLEXVolumeCalibration" ExperimentWithInstrumentNoData <|-- CytoFLEXVolumeCalibration click ExperimentWithInstrumentNoData href "../ExperimentWithInstrumentNoData" CytoFLEXVolumeCalibration : data_acquisition_date CytoFLEXVolumeCalibration --> "1" DateValue : data_acquisition_date click DateValue href "../DateValue" CytoFLEXVolumeCalibration : elab_experiment CytoFLEXVolumeCalibration --> "1" ELabExperiment : elab_experiment click ELabExperiment href "../ELabExperiment" CytoFLEXVolumeCalibration : fc_flow_rate_setting CytoFLEXVolumeCalibration --> "0..1" FlowRateValue : fc_flow_rate_setting click FlowRateValue href "../FlowRateValue" CytoFLEXVolumeCalibration : fc_injection_mode CytoFLEXVolumeCalibration --> "0..1" FCInjectionModeValue : fc_injection_mode click FCInjectionModeValue href "../FCInjectionModeValue" CytoFLEXVolumeCalibration : instrument_id CytoFLEXVolumeCalibration --> "1" ELabItemValue : instrument_id click ELabItemValue href "../ELabItemValue" CytoFLEXVolumeCalibration : operator_id CytoFLEXVolumeCalibration --> "1" OperatorIDValue : operator_id click OperatorIDValue href "../OperatorIDValue" CytoFLEXVolumeCalibration : passed_volume_calibration CytoFLEXVolumeCalibration --> "0..1" BooleanValue : passed_volume_calibration click BooleanValue href "../BooleanValue" CytoFLEXVolumeCalibration : percent_volume_deviation CytoFLEXVolumeCalibration --> "0..1" UnitlessValue : percent_volume_deviation click UnitlessValue href "../UnitlessValue" CytoFLEXVolumeCalibration : project_id CytoFLEXVolumeCalibration --> "1" ELabItemValue : project_id click ELabItemValue href "../ELabItemValue" CytoFLEXVolumeCalibration : template_name CytoFLEXVolumeCalibration --> "1" CytoFLEXVolumeCalibrationTemplateNameValue : template_name click CytoFLEXVolumeCalibrationTemplateNameValue href "../CytoFLEXVolumeCalibrationTemplateNameValue"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
fc_flow_rate_setting 0..1
FlowRateValue		 Set flow rate of data acquisition on flow cytometer direct
fc_injection_mode 0..1
FCInjectionModeValue		 Sample acquisition format in flow cytometer direct
passed_volume_calibration 0..1
BooleanValue		 (?) The volume that is passed during a volume calibration direct
percent_volume_deviation 0..1
UnitlessValue		 The volume deviation (measured volume divided by target volume) from a calibr... direct
instrument_id 1
ELabItemValue		 The instrument used to acquire the data in an experiment (linked item from EL... ExperimentWithInstrumentNoData
data_acquisition_date 1
DateValue		 Date on which data were acquired according to eLabFTW record Experiment
elab_experiment 1
ELabExperiment		 A self-reference to this experiment record Experiment
operator_id 1
OperatorIDValue		 Instrument operator during an experiment (a linked item from ELabFTW) Experiment
project_id 1
ELabItemValue		 The project that an experiment supports (link to an ELabFTW item) Experiment
template_name 1
CytoFLEXVolumeCalibrationTemplateNameValue		 The name of the template used to collect metadata for an experiment in ELabFT... Experiment

Identifier and Mapping Information

Annotations

property value
elabftw_template True

Schema Source

  • from schema: https://w3id.org/usnistgov/microbial-experiment-schema

Mappings

Mapping Type Mapped Value
self microbial_experiment_schema:CytoFLEXVolumeCalibration
native microbial_experiment_schema:CytoFLEXVolumeCalibration

LinkML Source

Direct

name: CytoFLEXVolumeCalibration
annotations:
  elabftw_template:
    tag: elabftw_template
    value: true
description: Metadata describing a volume calibration using the CytoFLEX instrument
title: CytoFLEX_VolumeCalibration
from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
is_a: ExperimentWithInstrumentNoData
slots:
- fc_flow_rate_setting
- fc_injection_mode
- passed_volume_calibration
- percent_volume_deviation
slot_usage:
  template_name:
    name: template_name
    range: CytoFLEXVolumeCalibrationTemplateNameValue

Induced

name: CytoFLEXVolumeCalibration
annotations:
  elabftw_template:
    tag: elabftw_template
    value: true
description: Metadata describing a volume calibration using the CytoFLEX instrument
title: CytoFLEX_VolumeCalibration
from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
is_a: ExperimentWithInstrumentNoData
slot_usage:
  template_name:
    name: template_name
    range: CytoFLEXVolumeCalibrationTemplateNameValue
attributes:
  fc_flow_rate_setting:
    name: fc_flow_rate_setting
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: Fluorescence FC
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
      elabftw_default_unit:
        tag: elabftw_default_unit
        value: µL/min
    description: Set flow rate of data acquisition on flow cytometer
    title: FCFlowRateSetting
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: fc_flow_rate_setting
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - CytoFLEXAcquisition
    - CytoFLEXVolumeCalibration
    - GenericTemplateDeprecated
    - GenericTemplate
    range: FlowRateValue
    required: false
  fc_injection_mode:
    name: fc_injection_mode
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: Fluorescence FC
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Sample acquisition format in flow cytometer
    title: FCInjectionMode
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    ifabsent: Tube
    alias: fc_injection_mode
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - CytoFLEXAcquisition
    - CytoFLEXVolumeCalibration
    - GenericTemplateDeprecated
    - GenericTemplate
    range: FCInjectionModeValue
    required: false
  passed_volume_calibration:
    name: passed_volume_calibration
    description: (?) The volume that is passed during a volume calibration
    title: PassedVolumeCalibration
    todos:
    - double check description
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: passed_volume_calibration
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - CytoFLEXVolumeCalibration
    - GenericTemplate
    range: BooleanValue
    required: false
  percent_volume_deviation:
    name: percent_volume_deviation
    description: The volume deviation (measured volume divided by target volume) from
      a calibration experiment
    title: PercentVolumeDeviation
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: percent_volume_deviation
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - CytoFLEXVolumeCalibration
    - GenericTemplate
    range: UnitlessValue
    required: false
  instrument_id:
    name: instrument_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The instrument used to acquire the data in an experiment (linked
      item from ELabFTW)
    title: InstrumentID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: instrument_id
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - ExperimentWithInstrument
    - ExperimentWithInstrumentNoData
    range: ELabItemValue
    required: true
  data_acquisition_date:
    name: data_acquisition_date
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Date on which data were acquired according to eLabFTW record
    title: DataAcquisitionDate
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: data_acquisition_date
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - Experiment
    range: DateValue
    required: true
  elab_experiment:
    name: elab_experiment
    annotations:
      elabftw_user_input:
        tag: elabftw_user_input
        value: false
    description: A self-reference to this experiment record
    title: ELabFTW Experiment
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: elab_experiment
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - Experiment
    range: ELabExperiment
    required: true
    inlined: true
    inlined_as_list: true
  operator_id:
    name: operator_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: Instrument operator during an experiment (a linked item from ELabFTW)
    title: OperatorID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: operator_id
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - Experiment
    range: OperatorIDValue
    required: true
  project_id:
    name: project_id
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The project that an experiment supports (link to an ELabFTW item)
    title: ProjectID
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: project_id
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - Experiment
    range: ELabItemValue
    required: true
  template_name:
    name: template_name
    annotations:
      elabftw_group:
        tag: elabftw_group
        value: LabCAS
      read_only:
        tag: read_only
        value: true
      elabftw_user_input:
        tag: elabftw_user_input
        value: true
    description: The name of the template used to collect metadata for an experiment
      in ELabFTW. This value controls what specific metadata fields are allowed.
    title: TemplateName
    from_schema: https://w3id.org/usnistgov/microbial-experiment-schema
    rank: 1000
    alias: template_name
    owner: CytoFLEXVolumeCalibration
    domain_of:
    - Experiment
    range: CytoFLEXVolumeCalibrationTemplateNameValue
    required: true