Bead
====

.. currentmodule:: mbuild_polybuild.cg_monomers.bead

mbuild_polybuild.cg_monomers.bead.Bead

.. autoclass:: Bead
   :members:
   :show-inheritance:

   
   
   
      .. autosummary::
         :toctree:
      
         Bead.box
         Bead.center
         Bead.charge
         Bead.element
         Bead.mass
         Bead.maxs
         Bead.mins
         Bead.n_bonds
         Bead.n_direct_bonds
         Bead.n_particles
         Bead.periodicity
         Bead.pos
         Bead.root
         Bead.xyz
         Bead.xyz_with_ports
   
   

   
      .. autosummary::
         :toctree:
      
         Bead.add
         Bead.add_bond
         Bead.all_ports
         Bead.ancestors
         Bead.available_ports
         Bead.bonds
         Bead.check_for_overlap
         Bead.condense
         Bead.direct_bonds
         Bead.energy_minimize
         Bead.flatten
         Bead.freud_generate_bonds
         Bead.from_gmso
         Bead.from_parmed
         Bead.from_pybel
         Bead.from_trajectory
         Bead.generate_bonds
         Bead.get_boundingbox
         Bead.get_smiles
         Bead.is_independent
         Bead.min_periodic_distance
         Bead.particles
         Bead.particles_by_element
         Bead.particles_by_name
         Bead.particles_in_range
         Bead.print_hierarchy
         Bead.referenced_ports
         Bead.remove
         Bead.remove_bond
         Bead.reset_labels
         Bead.rotate
         Bead.rotate_dihedral
         Bead.save
         Bead.spin
         Bead.successors
         Bead.to_freud
         Bead.to_gmso
         Bead.to_hoomdsnapshot
         Bead.to_intermol
         Bead.to_networkx
         Bead.to_parmed
         Bead.to_pybel
         Bead.to_rdkit
         Bead.to_smiles
         Bead.to_trajectory
         Bead.translate
         Bead.translate_to
         Bead.update_coordinates
         Bead.visualize