Cbma
====

.. currentmodule:: mbuild_polybuild.aa_monomers.cbma

mbuild_polybuild.aa_monomers.cbma.Cbma

.. autoclass:: Cbma
   :members:
   :show-inheritance:

   
   
   
      .. autosummary::
         :toctree:
      
         Cbma.box
         Cbma.center
         Cbma.charge
         Cbma.element
         Cbma.mass
         Cbma.maxs
         Cbma.mins
         Cbma.n_bonds
         Cbma.n_direct_bonds
         Cbma.n_particles
         Cbma.periodicity
         Cbma.pos
         Cbma.root
         Cbma.xyz
         Cbma.xyz_with_ports
   
   

   
      .. autosummary::
         :toctree:
      
         Cbma.add
         Cbma.add_bond
         Cbma.all_ports
         Cbma.ancestors
         Cbma.available_ports
         Cbma.bonds
         Cbma.check_for_overlap
         Cbma.condense
         Cbma.direct_bonds
         Cbma.energy_minimize
         Cbma.flatten
         Cbma.freud_generate_bonds
         Cbma.from_gmso
         Cbma.from_parmed
         Cbma.from_pybel
         Cbma.from_trajectory
         Cbma.generate_bonds
         Cbma.get_boundingbox
         Cbma.get_smiles
         Cbma.is_independent
         Cbma.min_periodic_distance
         Cbma.particles
         Cbma.particles_by_element
         Cbma.particles_by_name
         Cbma.particles_in_range
         Cbma.print_hierarchy
         Cbma.referenced_ports
         Cbma.remove
         Cbma.remove_bond
         Cbma.reset_labels
         Cbma.rotate
         Cbma.rotate_dihedral
         Cbma.save
         Cbma.spin
         Cbma.successors
         Cbma.to_freud
         Cbma.to_gmso
         Cbma.to_hoomdsnapshot
         Cbma.to_intermol
         Cbma.to_networkx
         Cbma.to_parmed
         Cbma.to_pybel
         Cbma.to_rdkit
         Cbma.to_smiles
         Cbma.to_trajectory
         Cbma.translate
         Cbma.translate_to
         Cbma.update_coordinates
         Cbma.visualize