TMSTB
=====

.. currentmodule:: mbuild_polybuild.aa_functional_groups.tmstb

mbuild_polybuild.aa_functional_groups.tmstb.TMSTB

.. autoclass:: TMSTB
   :members:
   :show-inheritance:

   
   
   
      .. autosummary::
         :toctree:
      
         TMSTB.box
         TMSTB.center
         TMSTB.charge
         TMSTB.element
         TMSTB.mass
         TMSTB.maxs
         TMSTB.mins
         TMSTB.n_bonds
         TMSTB.n_direct_bonds
         TMSTB.n_particles
         TMSTB.periodicity
         TMSTB.pos
         TMSTB.root
         TMSTB.xyz
         TMSTB.xyz_with_ports
   
   

   
      .. autosummary::
         :toctree:
      
         TMSTB.add
         TMSTB.add_bond
         TMSTB.all_ports
         TMSTB.ancestors
         TMSTB.available_ports
         TMSTB.bonds
         TMSTB.check_for_overlap
         TMSTB.condense
         TMSTB.direct_bonds
         TMSTB.energy_minimize
         TMSTB.flatten
         TMSTB.freud_generate_bonds
         TMSTB.from_gmso
         TMSTB.from_parmed
         TMSTB.from_pybel
         TMSTB.from_trajectory
         TMSTB.generate_bonds
         TMSTB.get_boundingbox
         TMSTB.get_smiles
         TMSTB.is_independent
         TMSTB.min_periodic_distance
         TMSTB.particles
         TMSTB.particles_by_element
         TMSTB.particles_by_name
         TMSTB.particles_in_range
         TMSTB.print_hierarchy
         TMSTB.referenced_ports
         TMSTB.remove
         TMSTB.remove_bond
         TMSTB.reset_labels
         TMSTB.rotate
         TMSTB.rotate_dihedral
         TMSTB.save
         TMSTB.spin
         TMSTB.successors
         TMSTB.to_freud
         TMSTB.to_gmso
         TMSTB.to_hoomdsnapshot
         TMSTB.to_intermol
         TMSTB.to_networkx
         TMSTB.to_parmed
         TMSTB.to_pybel
         TMSTB.to_rdkit
         TMSTB.to_smiles
         TMSTB.to_trajectory
         TMSTB.translate
         TMSTB.translate_to
         TMSTB.update_coordinates
         TMSTB.visualize