PTP
===

.. currentmodule:: mbuild_polybuild.aa_functional_groups.ptp

mbuild_polybuild.aa_functional_groups.ptp.PTP

.. autoclass:: PTP
   :members:
   :show-inheritance:

   
   
   
      .. autosummary::
         :toctree:
      
         PTP.box
         PTP.center
         PTP.charge
         PTP.element
         PTP.mass
         PTP.maxs
         PTP.mins
         PTP.n_bonds
         PTP.n_direct_bonds
         PTP.n_particles
         PTP.periodicity
         PTP.pos
         PTP.root
         PTP.xyz
         PTP.xyz_with_ports
   
   

   
      .. autosummary::
         :toctree:
      
         PTP.add
         PTP.add_bond
         PTP.all_ports
         PTP.ancestors
         PTP.available_ports
         PTP.bonds
         PTP.check_for_overlap
         PTP.condense
         PTP.direct_bonds
         PTP.energy_minimize
         PTP.flatten
         PTP.freud_generate_bonds
         PTP.from_gmso
         PTP.from_parmed
         PTP.from_pybel
         PTP.from_trajectory
         PTP.generate_bonds
         PTP.get_boundingbox
         PTP.get_smiles
         PTP.is_independent
         PTP.min_periodic_distance
         PTP.particles
         PTP.particles_by_element
         PTP.particles_by_name
         PTP.particles_in_range
         PTP.print_hierarchy
         PTP.referenced_ports
         PTP.remove
         PTP.remove_bond
         PTP.reset_labels
         PTP.rotate
         PTP.rotate_dihedral
         PTP.save
         PTP.spin
         PTP.successors
         PTP.to_freud
         PTP.to_gmso
         PTP.to_hoomdsnapshot
         PTP.to_intermol
         PTP.to_networkx
         PTP.to_parmed
         PTP.to_pybel
         PTP.to_rdkit
         PTP.to_smiles
         PTP.to_trajectory
         PTP.translate
         PTP.translate_to
         PTP.update_coordinates
         PTP.visualize