MPTB
====

.. currentmodule:: mbuild_polybuild.aa_functional_groups.mptb

mbuild_polybuild.aa_functional_groups.mptb.MPTB

.. autoclass:: MPTB
   :members:
   :show-inheritance:

   
   
   
      .. autosummary::
         :toctree:
      
         MPTB.box
         MPTB.center
         MPTB.charge
         MPTB.element
         MPTB.mass
         MPTB.maxs
         MPTB.mins
         MPTB.n_bonds
         MPTB.n_direct_bonds
         MPTB.n_particles
         MPTB.periodicity
         MPTB.pos
         MPTB.root
         MPTB.xyz
         MPTB.xyz_with_ports
   
   

   
      .. autosummary::
         :toctree:
      
         MPTB.add
         MPTB.add_bond
         MPTB.all_ports
         MPTB.ancestors
         MPTB.available_ports
         MPTB.bonds
         MPTB.check_for_overlap
         MPTB.condense
         MPTB.direct_bonds
         MPTB.energy_minimize
         MPTB.flatten
         MPTB.freud_generate_bonds
         MPTB.from_gmso
         MPTB.from_parmed
         MPTB.from_pybel
         MPTB.from_trajectory
         MPTB.generate_bonds
         MPTB.get_boundingbox
         MPTB.get_smiles
         MPTB.is_independent
         MPTB.min_periodic_distance
         MPTB.particles
         MPTB.particles_by_element
         MPTB.particles_by_name
         MPTB.particles_in_range
         MPTB.print_hierarchy
         MPTB.referenced_ports
         MPTB.remove
         MPTB.remove_bond
         MPTB.reset_labels
         MPTB.rotate
         MPTB.rotate_dihedral
         MPTB.save
         MPTB.spin
         MPTB.successors
         MPTB.to_freud
         MPTB.to_gmso
         MPTB.to_hoomdsnapshot
         MPTB.to_intermol
         MPTB.to_networkx
         MPTB.to_parmed
         MPTB.to_pybel
         MPTB.to_rdkit
         MPTB.to_smiles
         MPTB.to_trajectory
         MPTB.translate
         MPTB.translate_to
         MPTB.update_coordinates
         MPTB.visualize