masskit.apps.process package

Subpackages

• masskit.apps.process.libraries package
  • Subpackages
    • masskit.apps.process.libraries.conf package
      • Subpackages
      • Module contents
  • Submodules
  • masskit.apps.process.libraries.batch_converter module
    • batch_converter_app()
    • write_batch()
  • masskit.apps.process.libraries.converter module
    • converter_app()
    • disable_console_logging()
  • masskit.apps.process.libraries.fasta2peptides module
    • PepTuple
      • PepTuple.cterm
      • PepTuple.nterm
      • PepTuple.pep
    • count_rhk()
    • extract_peptides()
    • fasta()
    • fasta2peptides_app()
    • fasta_parse_id()
    • nonspecific()
    • pepgen
      • pepgen.add_row()
      • pepgen.enumerate()
      • pepgen.finalize_table()
      • pepgen.permute_mods()
    • semitryptic()
    • trypsin()
    • tryptic()
  • masskit.apps.process.libraries.optimize_parquet module
  • masskit.apps.process.libraries.parquet_info module
  • masskit.apps.process.libraries.pepsearch2parquet module
    • read_pepsearch()
  • masskit.apps.process.libraries.pubchem_links module
    • Analyze
      • Analyze.do_joins()
      • Analyze.load_cas()
      • Analyze.load_nist_data()
      • Analyze.patent_counts()
      • Analyze.pmid_counts()
      • Analyze.save_data()
      • Analyze.wikipedia_counts()
    • Download
      • Download.download_url()
    • PubChemCAS
      • PubChemCAS.get_pubchem_cas()
      • PubChemCAS.parse_pubchem_json()
      • PubChemCAS.pubchem_cas()
      • PubChemCAS.use_pubchem_cache()
    • PubChemFTP
      • PubChemFTP.cache_pubchem_files()
      • PubChemFTP.get_convert_options()
      • PubChemFTP.get_csv_type()
      • PubChemFTP.get_new_columns()
      • PubChemFTP.process()
    • PubChemWiki
      • PubChemWiki.fetch_counts()
      • PubChemWiki.get_pubchem_wiki()
      • PubChemWiki.parse_counts()
      • PubChemWiki.parse_pubchem_json()
      • PubChemWiki.pubchem_wiki()
      • PubChemWiki.use_pubchem_cache()
    • main()
  • masskit.apps.process.libraries.rewrite_sdf module
    • rewrite_sdf_app()
  • masskit.apps.process.libraries.transform_table module
    • cast_columns()
    • compress_start_stop()
    • concat_to_output()
    • get_sort_index()
    • misc_operations()
    • process_and_cache()
    • str2pyarrow_type()
    • transform_table_app()
  • masskit.apps.process.libraries.update_sets module
    • update_sets_app()
  • Module contents
• masskit.apps.process.mols package
  • Subpackages
    • masskit.apps.process.mols.conf package
      • Subpackages
      • Module contents
  • Submodules
  • masskit.apps.process.mols.reactor module
    • reactor_app()
  • masskit.apps.process.mols.shortest_path module
    • BatchWriter
      • BatchWriter.close()
      • BatchWriter.write_table()
    • batch_reader()
    • get_ring_paths()
    • get_shortest_paths()
    • mol2path()
    • ordered_pair()
    • path_generator_app()
  • Module contents

Module contents