Apply misalignment to a model tilt series.

Parameters:¶

stack: TomoStack¶

TomoStack simluation

min_shift: int = -5¶

Minimum amount of jitter to apply to the stack

max_shift: int = 5¶

Maximum amount of jitter to apply to the stack

tilt_shift: int = 0¶

Number of pixels by which to offset the tilt axis from the center

tilt_rotate: int = 0¶

Amount of rotation to apply to the stack

y_only: bool = False¶

If True, limit the application of jitter to the y-direction only. Default is False

interp_order: int = 3¶

The order of spline interpolation used by the scipy.ndimage.shift() or scipy.ndimage.rotate() function. The order must be in the range 0-5.

Returns:¶

misaligned – Misaligned copy of the input TomoStack

Return type:¶

TomoStack